1. Probing mRNA kinetics in space and time in Escherichia coli using two-color single-molecule fluorescence in situ hybridization Kim S and Vaidya K Journal of Visualized Experiments, 2020 [OpenAccess] [github]
  2. Better together: Cooperation and antagonism between RNA polymerases during transcription in vivo Kim S Bioessays, 2020 [PubMed] [OpenAccess]


  1. Long-distance cooperative and antagonistic RNA polymerase dynamics via DNA supercoiling Kim S, Beltran B, Irnov I, and Jacobs-Wagner C Cell, 2019 [PubMed] [PDF] [github]
  2. Nucleoid size scaling and intracellular organization of translation across bacteria Gray WT, Govers SK, Xiang Y, Parry BR, Campos M, Kim S, and Jacobs-Wagner C Cell, 2019 [PubMed] [PDF] [github]


  1. Effects of mRNA degradation and site-specific transcriptional pausing on protein expression noise Kim S and Jacobs-Wagner C Biophysical Journal, 2018 [PubMed] [PDF] [Supp] [github]


  1. Probing allostery through DNA Kim S*, Broströmer E*, Xing D*, Jin J*, Chong S, Ge H, Wang S, Gu C, Yang L, Gao YQ, Su X-D, Sun Y, and Xie XS Science, 2013 [PubMed] [PDF] [Supp]


  1. Single-molecule study of DNA polymerization activity of HIV-1 reverse transcriptase on DNA templates Kim S, Schroeder CM, and Xie XS Journal of Molecular Biology, 2010 [PubMed] [PDF] [Supp]


  1. Hydrodynamic flow-stretching assay for single-molecule studies of nucleic acid–protein interactions Schroeder CM, Blainey PC, Kim S, and Xie XS Single-Molecule Techniques: A Laboratory Manual, 2008


  1. Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA Kim S, Blainey PC, Schroeder CM, and Xie XS Nature Methods, 2007 [PubMed] [PDF] [Supp]


  1. Direct observation of an intermediate state for a surface photochemical reaction initiated by hot electron transfer Lee J, Ryu S, Chang J, Kim S, and Kim SK The Journal of Physical Chemistry B, 2005 [PubMed]